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ISMB 2018 Chicago
We attended the ISMB 2018 conference of the ISCB (International Society of Computational Biology) from July 6 to July 10 at Chicago. Yannick gave a talk titled HFSP: High speed homology-driven function annotation of proteins.
Jul 10, 2018 1 min read news
ISMB 2018 Chicago
Chengsheng won the best talk at CAMDA
Congratulations to Chengsheng, who won the Best Talk prize on July 8 for the CAMDA (Critical Assessment of Massive Data Analysis) challenge during the ISMB 2018 conference of the ISCB (International Society of Computational Biology).
Jul 8, 2018 1 min read news
Chengsheng won the best talk at CAMDA
New publication by Yannick Mahlich and others
HFSP: high speed homology-driven function annotation of proteins Yannick Mahlich, Martin Steinegger, Burkhard Rost, Yana Bromberg Bioinformatics, Volume 34, Issue 13, 1 July 2018, Pages i304–i312 https://doi.org/10.1093/bioinformatics/bty262 The rapid drop in sequencing costs has produced many more (predicted) protein sequences than can feasibly be functionally annotated with wet-lab experiments.
May 1, 2018 1 min read news
New publication by Yannick Mahlich and others
Congratulations to Max's graduation
Max has recently received his doctorate degree from Technical University of Munich! Congratulations!
Apr 16, 2018 1 min read news
Congratulations to Max's graduation
Services updated
mi-faser: major update of web-service and standalone-version New in the public web-service: NMDS analysis between submitted samples Register user account for faster access to submissions / analyses faster submission processing (less then ~15min per 20GB reads)
Apr 3, 2018 1 min read news
New publication by Chengsheng Zhu and others
Functional sequencing read annotation for high precision microbiome analysis Chengsheng Zhu, Maximilian Miller, Srinayani Marpaka, Pavel Vaysberg, Malte C. Rühlemann, Guojun Wu Femke-Anouska Heinsen, Marie Tempel, Liping Zhao, Wolfgang Lieb Andre Franke, Yana Bromberg.
Nov 29, 2017 1 min read news
New publication by Chengsheng Zhu and others
Fourth International Society for Computational Biology Latin America Bioinformatics Conference, Buenos Aires, Argentina
Dr. Yana Bromberg is chairing the Proteins session of the fourth International Society for Computational Biology Latin America Bioinformatics Conference (ISCB-LA) together with Dr. Diego U. Ferreiro (Laboratorio de Fisiología de Proteins, Dpto Química Biológica / IQUIBICEN-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires).
Nov 17, 2017 1 min read news
Fourth International Society for Computational Biology Latin America Bioinformatics Conference, Buenos Aires, Argentina
New Publication by Chengsheng Zhu and others
fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks Zhu Chengsheng, Mahlich Yannick, Miller Maximilian, Bromberg Yana; fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks, Nucleic Acids Research, https://doi.
Nov 10, 2017 1 min read news
New Publication by Chengsheng Zhu and others
New Publication by Maximilian Miller and others
We developed clubber (CLUster-load Balancer for Bioinformatics E-Resources) to automate distribution of computation between independent and heterogenous compute resources based on individual workloads, queueing, and computation times. clubber is available as docker image and as GitHub repository via bitbucket.
Jun 26, 2017 1 min read news
New Publication by Maximilian Miller and others
Dr. Yana Bromberg spoke at 5th Annual Genetics and Genomics conference
Dr. Yana Bromberg spoke at the virtual conference Genetics and Genomics 2017. The title of the talk is: “What went wrong in the prediction of functional effects of exomic variation”.
May 25, 2017 1 min read news