mi-faser: major update of web-service and standalone-version New in the public web-service:
NMDS analysis between submitted samples
Register user account for faster access to submissions / analyses
faster submission processing (less then ~15min per 20GB reads)
Functional sequencing read annotation for high precision microbiome analysis Chengsheng Zhu, Maximilian Miller, Srinayani Marpaka, Pavel Vaysberg, Malte C. Rühlemann, Guojun Wu Femke-Anouska Heinsen, Marie Tempel, Liping Zhao, Wolfgang Lieb Andre Franke, Yana Bromberg.
Dr. Yana Bromberg is chairing the Proteins session of the fourth International Society for Computational Biology Latin America Bioinformatics Conference (ISCB-LA) together with Dr. Diego U. Ferreiro (Laboratorio de Fisiología de Proteins, Dpto Química Biológica / IQUIBICEN-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires).
We developed clubber (CLUster-load Balancer for Bioinformatics E-Resources) to automate distribution of computation between independent and heterogenous compute resources based on individual workloads, queueing, and computation times.
clubber is available as docker image and as GitHub repository via bitbucket.
Dr. Yana Bromberg spoke at the virtual conference Genetics and Genomics 2017. The title of the talk is: “What went wrong in the prediction of functional effects of exomic variation”.
A paper came out in Nature Scientific Reports with collaborators Jonas Reeb, Maximilian Hecht, Maria Schelling, Tjaart Andries Petrus De Beer, Yana Bromberg & Burkhard Rost.
The title of the paper is “Common sequence variants affect molecular function more than rare variants?
On May 10th Dr. Yana Bromberg gave an invited talk at the invitation of Dr. Liping Zhao at Shanghai Jiao Tong University in Shanghai, China.
The title of the talk is “Functional basis of microbiome annotation: theory to practice”.
On May 4-5 2017 Yannick Mahlich is presenting at a poster session of TUM-IAS General Assembly. The title of the work is “Bacterial proteomes and microbial communities: environmental preferences and functional profiles”.